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Chapter "Alignment of Biological Sequences with Jalview" is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.

This volume is a collection of protocols that discuss how to install and run tools for calculation and visualization of multiple sequence alignments (MSAs), and other analyses related to MSAs. Chapters cover basic MSA tools and specially designed tools to deal with new types of data resulting from recent developments in sequencing technologies. Written in the highly successful Methods in Molecular Biology series format, chapters include introd...